I used to do it because that's what was supposed to be the right way to store them... but I discovered they don't really stop rust in the hot humid Louisiana climate ... it does cover any rust so you can't see it untill it's a bigger problem .
I stopped leaving boolits in the mould and have since found spraying the warm (not hot) mould with a Dry Spray Lube before storing leaves a rust protective coating that doesn't wrinkle boolits or have to be removed before casting ... the dry spray lube acts as a mould release and the boolits just jump out the mould when opened .
Gary