The mold is brass. It didn't matter which cavity was filled last, the last two were the most consistent.
However, I found that if I primed the spout before sweeping the mold under the silver stream, there was virtually no difference in consistency between the cavities.
I surmise that you are partially right, that the mold is responding to the heat, but I think that brass is such a good conductor that it is actually a direct result of the temperature of the alloy that is being thrown. It seems that anything that causes the alloy to cool slightly (like throwing the ladle full of priming shots back in the pot) would cause this instant variation.
That's just a theory though, and I would be very interested in your findings if you were so inclined to check on that for me.
More testing will be done. I had to put the pot away and get back to working on guns, but before I did, I took an old bustedazz Lyman 429421 mold and cast up about 50 boolits with it and laid out a curve. It was pretty sad. I was priming the spout like before and everything, but waiting 5 seconds between fills. This mold is pretty used and abused though. Just shows to go ya that every mold is a law unto itself, and requires different techniques to produce good results. That's where the bell curve comes in and tells you what works for each mold, and what doesn't.